SPINS
brainCOLOR Atlas
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Overview
The brainCOLOR atlas is a manually labeled human neuroanatomical parcellation scheme in which expert raters delineated hundreds of cortical and subcortical structures on high-resolution MRI scans, assigning consistent, color-coded labels to gray- and white-matter regions across the whole brain. It was constructed through detailed, slice-by-slice manual segmentation based on established neuroanatomical landmarks, with a standardized labeling protocol to ensure reproducibility across raters and subjects; the resulting labels are often distributed in MNI or subject-specific spaces and are designed to integrate with common neuroimaging workflows. The atlas is used for automated or semi-automated segmentation, region-of-interest definition, structural and functional MRI analyses, and as a reference standard for validating new parcellation algorithms and multimodal imaging methods in both research and clinical contexts. There is no direct link to the website.
Overview generated by GPT-4o (2026).
Click any region name to view its full visualization and description.
Citation
Wali Sidiqyar*, Gaurav Rudravaram*, Elyssa M. McMaster, Trent M. Schwartz, Adam M. Saunders, Kurt G. Schilling, Bennett A. Landman "Introducing SPINS: A Shared Public Visualization Library of Neuroanatomical Structures." Medical Imaging with Deep Learning- short paper
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